CDS

Accession Number TCMCG007C46311
gbkey CDS
Protein Id XP_009106521.2
Location complement(join(27923082..27923186,27923434..27923499,27923597..27923680,27923756..27923863,27923962..27924057,27924157..27924243,27924322..27924432,27924511..27924618,27924811..27924921,27925002..27925070,27925200..27925328,27925410..27925658,27925747..27926423,27926887..27926985,27927136..27927261,27927352..27927559,27927873..27927922,27927997..27928147))
Gene LOC103832301
GeneID 103832301
Organism Brassica rapa

Protein

Length 877aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA249065
db_source XM_009108273.3
Definition synaptonemal complex protein 1 isoform X1 [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category S
Description Synaptonemal complex protein 1-like isoform X1
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko03036        [VIEW IN KEGG]
KEGG_ko ko:K19533        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0000228        [VIEW IN EMBL-EBI]
GO:0000280        [VIEW IN EMBL-EBI]
GO:0000793        [VIEW IN EMBL-EBI]
GO:0000794        [VIEW IN EMBL-EBI]
GO:0000795        [VIEW IN EMBL-EBI]
GO:0000802        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005694        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006310        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0007049        [VIEW IN EMBL-EBI]
GO:0007059        [VIEW IN EMBL-EBI]
GO:0007127        [VIEW IN EMBL-EBI]
GO:0007129        [VIEW IN EMBL-EBI]
GO:0007131        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0022402        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0035825        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044427        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044454        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045132        [VIEW IN EMBL-EBI]
GO:0045143        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048285        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0051321        [VIEW IN EMBL-EBI]
GO:0061982        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070192        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0098813        [VIEW IN EMBL-EBI]
GO:0099086        [VIEW IN EMBL-EBI]
GO:0140013        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1903046        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGCAGAAGCTAGGGTTTCCGGCGATGAAGAGCTTAGATCAGATGCGATCGATGGCTGGATCGGCGGGGAGGAACCTCGCATTCTCCTCGCGTCAACAACCTCACGATTCCGTCTCTTCCGGAAACTTCTCGAATCTCAAGTCTACGGCAGAGAAACTGGTGAAGGAACAGGCGTCGATGAAATCCGATCTCGAATTGGCGAACTCTAAGCTGAGAAAGTCGATGGATCATATACTCGCTTTAGAGGAGAAACTGCAGAATGCTTTCAACGAGAATGCTAAGCTCAGGGTGATGCAAAAGGAGGATGAAAAGCTTTGGAGAGGGATGGAGTCCAAATTCTCTTCGACGAAGACTCTTTGTGATCAGCTAACTGAGACTCTGCAACACTTGGCTTCCCAGGTTCAAGAAGCTGAGAAGGATAAAGAGCTTTTTGAGTCCAAGTTCTTTACTAGTGCGGAAGTTATAGATTCTTTAAAGCAGCAAATGGAAGACCTGTCTTCAAGATTGGTCGCTGCTGAAGAAAACATCAAACGCCGGGAGAAGGAACTAGAGGAGCTCAAACTTGAGAAAGAACAGACAGAGAACTCTTATCTGAATGAACAGTGTAGAACCGCCAATCTCTTAAAGGAGAAAGATGCTATGATAGTGAACTCTGAAGCAGCTATAGCTGAAGCAAAACTCAACATTGAGAATTTAAACCTCCAACTTGAGAAGGTGCGTGTTGAGTTAACATCAAAGGAAGATGAGGCCAAATACCTTGTTGGAGTCAAGGAGAAGCTAGAACGAGACAAGATGGATATTCAGCTGAGTGCTGATAATCTATCTGAGAAACTGATTACCTCAGAGCATGAAGTCAAGAAGCTCGAGGGCTTTGTACACTCTTTGGCAACAGAGTTGGCTGAATTGGACAAGAAGAACTTGGCCTTCATGGAGAACTTTGATAAGCTAAATGGTTTATATGACACTCACCTTATGTTACTCCAGAAGGATAGAGATATTGCTTCTGATCGTGCTCAAAGATTATATAATCAACTCCAAGGAGAGTTCTCGACTGTAACCGTCCAAAAAGAAGCTCTGCAGTCATCAGCCAACGAGTTGTATGCACAAAAAGAGGAACTGAAGAAAGCTAAAGAGTCACTGGTCTCTCAACTTGGCGAGGAACGCTGCTCCGCAAAGCAGGCAATTGAAAAACTAGAGTCTGAAGCAAAATGTCTGGTTGTAACAAATTCTGAGACAGAAGCAGTATTATTGGAGCTGAAAGAGGAATTAGAAGCATTGTCTGAAAATCTGAGGGCCTCAGAGAATAAGACGCAAGAATTGTTGTTAAAGCTTTCGACATCAGAGACTGAAAGCAAAGAGAACTATGAGAAGCTGCAGGCTGATGCACAGAGAAAGGCTGAAGAAATTGAGATTTTGCAGAAGGAGAGCGAGAGCAATCAGCTGCGTGTGGAATCATTCTTGAAAGAGGTGAACCAGCTCCAAAGCGTTATTGAAGAGAAAGAGCTTCTTATCAATCAATGCAAGGAAAATGAGAAGAAGCTGGACCAGAAAACAACAGAGGACAAGGAGCTACTGGCAGCTGCTGAAACTAAGCTTCTAGAGGCGAAGAAGCAATATGATCTTATGCTGGAAAATAAACAGATGGAATTATCTAGGCACTTGAAGGAGTTATCTCAGAGGAATGACCAGGCGATTAATGAAATCCGGAGGAAATATGATGAGGAGAAACAGGAGATTATTAAAGCTGAAAAGGAAAAGGTTGAGAAGGTTATCAGAGAGCTATCCACTAAATATGATAAAGAAATTTCTGACTGTAAAGCCGAATCAAAGTACCAATTGCTGACCATTCAAGAGGATCATGCTTCTCTGATATTCACTATTCGCGAGGAACATGGAAATAAGGAGTTCAACCTCAAAGCCAAGCACGATGAGGAACTGAGACAAGCTCAGATTCAGGCCGAAACTGAATTGAAAGAGAGGATAACAACAATCAGGAACGAGCATGATGCTCAACTGAAAGCATTTAAGTGTCAGTACGAAGATGATTGCAAGAAGCTGCAAGACGAGTTAGATCTTCAGAGATCAAAAGAAGAGAGGCAAAGAGCTTTGTTGCAGATGCAGTGGAGGGTGATGAGTGACAAAGCTCCAGAAGAGCAAGAAGTGAGCTCTAGGAAGGAATACTCAGTCTCATCTGTCAAAGTGAGAGGCTCTCGTCCTCCTATTAGCAGAAAAAGCCAGCATACAACAGTGATGCTTGATGAAGATGAACAGGATTCTCCTTTTGTAAAGGAAGCAGAAACACCTGGGACAAAGATGCTAAAGAAAGTTGAAAATACAAATACAAGAATAATAATGAGCAGCCAAAAGCAACATAGCAAGTTTACTCGTCGTGAACATGAAGCTGAAGCGAAGGATGGGAGGACCACTAAGCGAAGGAAAACAAAAGGCACAGTCATGTTTGAGGAGCCACAGAGGCGAACGACCCGGTTTACACCAAGAGCTAAGACCACCCCAAGAAGTATCGCTAAGGTGGCAGCCATAAGCAGCCATCCACCACGGTCTGCAAACATAGGAGATCTGTTTTCAGAAGGCTCTCTCAACCCGTACGCTGATGATCCATATGCATTTGACTGA
Protein:  
MQKLGFPAMKSLDQMRSMAGSAGRNLAFSSRQQPHDSVSSGNFSNLKSTAEKLVKEQASMKSDLELANSKLRKSMDHILALEEKLQNAFNENAKLRVMQKEDEKLWRGMESKFSSTKTLCDQLTETLQHLASQVQEAEKDKELFESKFFTSAEVIDSLKQQMEDLSSRLVAAEENIKRREKELEELKLEKEQTENSYLNEQCRTANLLKEKDAMIVNSEAAIAEAKLNIENLNLQLEKVRVELTSKEDEAKYLVGVKEKLERDKMDIQLSADNLSEKLITSEHEVKKLEGFVHSLATELAELDKKNLAFMENFDKLNGLYDTHLMLLQKDRDIASDRAQRLYNQLQGEFSTVTVQKEALQSSANELYAQKEELKKAKESLVSQLGEERCSAKQAIEKLESEAKCLVVTNSETEAVLLELKEELEALSENLRASENKTQELLLKLSTSETESKENYEKLQADAQRKAEEIEILQKESESNQLRVESFLKEVNQLQSVIEEKELLINQCKENEKKLDQKTTEDKELLAAAETKLLEAKKQYDLMLENKQMELSRHLKELSQRNDQAINEIRRKYDEEKQEIIKAEKEKVEKVIRELSTKYDKEISDCKAESKYQLLTIQEDHASLIFTIREEHGNKEFNLKAKHDEELRQAQIQAETELKERITTIRNEHDAQLKAFKCQYEDDCKKLQDELDLQRSKEERQRALLQMQWRVMSDKAPEEQEVSSRKEYSVSSVKVRGSRPPISRKSQHTTVMLDEDEQDSPFVKEAETPGTKMLKKVENTNTRIIMSSQKQHSKFTRREHEAEAKDGRTTKRRKTKGTVMFEEPQRRTTRFTPRAKTTPRSIAKVAAISSHPPRSANIGDLFSEGSLNPYADDPYAFD